PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g12410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 313aa    MW: 34845.1 Da    PI: 8.2717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g12410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016196218123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C++C+k+ +++  L +H   H
  CA06g12410 196 YQCEICNKVLKSSQALGSHKTIH 218
                 9******************9887 PP

2zf-C2H211.10.0012243265123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp Cgk F +   L  H r+H
  CA06g12410 243 HECPFCGKIFGSGQALGGHKRSH 265
                 79**************9999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.62E-5432No hitNo description
PROSITE profilePS5015710.346633IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-9630IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-7194265No hitNo description
Gene3DG3DSA:3.30.160.604.1E-4194228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-6195220IPR007087Zinc finger, C2H2
SMARTSM003550.021196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637196223IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SMARTSM003550.034243265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034243265IPR007087Zinc finger, C2H2
PfamPF139121.3E-9243265IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSMEKHKCKL CSRKFSSGKA MGGHMRSHLR ALPLPPKTPP QKQDSAAGGG GCSESTISLY  60
EDEEEEEEIR DDKCLSYVLR ENPKKSSRIV DPEFMDAGSV VHEKDQSETE STMKPTKRRS  120
KRTRLRRLFT SDHEAVDHHA KKEKKKTPEF ESVSSFSDTS PEEDIAVCLM MLSKDVWKKS  180
NSDESQLKDK KQGKYYQCEI CNKVLKSSQA LGSHKTIHKK NKSSSCNEEN SRQVRAKNVD  240
HDHECPFCGK IFGSGQALGG HKRSHILSSS ITGSSSSKVG ESLMDSSSGK FPYGFIDLNM  300
PAPVEDEDFS IS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016575121.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLM1AV171e-131M1AV17_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000309861e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.18e-31C2H2-like zinc finger protein